Biology Events

Nine-Day Workshop on Molecular Docking

ChemDraw Training Full Potential! Best Dreams! Sufficient impossible him may ten insensible put continuing. Oppose exeter income simple  twenty. Menu All Events Biology Chemistry Physics Data Science Material Science Testimonials Request For Collaboration One-Week Online Workshop on ChemDraw About The Event Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut commodo consequat duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur excepteur sint occaecat. 14 – 21 June 7.30 pm IST Course Plan Register Now Event Schedule Day 1 14-June, 7.30 pm IST Introduction to ChemDraw How to draw Organic Molecules Dr. Rajkumar G Assistant Professor Day 2 14-June, 7.30 pm IST Advanced Techniques Drawing Chemical Reactions Dr. Rajkumar G Assistant Professor Day 3 14-June, 7.30 pm IST Analysis using ChemDraw Properties prediction Dr. Rajkumar G Assistant Professor Day 4 14-June, 7.30 pm IST Chem3D Drawing 3D molecules Mr. Jibin S Research Scholar Day 5 14-June, 7.30 pm IST Chem3D: Calculations MM calculations using Chem3D Mr. Jibin S Research Scholar Day 6 14-June, 7.30 pm IST ChemDraw for Excel MM calculations using Chem3D Mr. Bobby Solanki Senior Technical Consultant, SCUBE Day 6 14-June, 7.30 pm IST Doubt-Clearing Session Assignments Discussion Dr. Sabeel M Basheer Assistant Professor Speakers Dr. Rajkumar G Assistant Professor Dr. Sabeel M Basheer Assistant Professor Mr. Bobby Solanki Art Director – Globex Mr. Jibin S Research Scholar Workshop Features Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut commodo consequat duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur excepteur sint occaecat. Cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum. Sed ut perspiciatis unde omnis iste natus error sit voluptatem accusantium doloremque laudantium, totam rem aperiam, eaque ipsa quae ab illo inventore veritatis. Registration Fee Indian Participants: Rs. 1500  Foriegn Participants: USD. 40  SIAS Research Form Student Member: Rs. 1350 SIAS Research Forum Faculty Member: Rs. 1200 Register Now Feedback from particiapnts! “Attending this ChemDraw workshop is a great opportunity to enhance my skills in molecular drawing and chemical structure visualization. The workshop typically covered a range of topics, from basic functionalities to advanced techniques like reaction mapping and 3D structure generation. I learned a lot from this workshop. Hope you will continue conducting such workshops in future also..thanks to the organising team of this workshop.” Dr.Babita Chaudhary Assistant Professor, Vardhaman College, Bijnor “The resource persons explained ChemDraw in a clear and understandable manner, which was very helpful for a beginner like me.” Manju P K Assistant Professor, Govt Polytechnic College, Kaduthuruthy “When I first saw the fee of the workshop 1500 rupees for Chemdraw a bit expensive i felt but once sessions started and knowing the things we did not know about the chemdraw it was completely worth finally its wondeerful workshop I am happy that I did not miss it.” Mokhamatam Sudheer Andhra University

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One-Week Workshop on Molecular Dynamics

Training Programs Molecular Dynamics for beginner! MD Simulations using GROMACS! GROMACS! Menu All Events Upcoming Events Past Events Testimonials Request For Collaboration Workshop on Molecular Dynamics Simulations One-Week Online Workshop on Molecular Dynamic Simulations GROMACS or NAMD Register Now Date 05 -12 Aug 2024 Time 07.30 pm IST About the Workshop Join us for an intensive one-week online workshop on Molecular Dynamics (MD) Simulation using GROMACS or NAMD. This workshop is designed to provide a comprehensive understanding of the principles and practical applications of MD simulations in biomolecular research. Participants will learn how to set up and perform simulations, analyze the results, and gain insights into the dynamic behavior of molecular systems. The workshop will utilize open-source tools such as GROMACS or NAMD, VMD, and other essential software, making it accessible for researchers and students alike. Target Audience Students, Researchers and faculty members of biology, chemistry, physics who are interested in learning about molecular dynamics simulations. Tools to be used NAMD/GROMACS, VMD, and others (All open-source Tools) Computer Configuration: Linux (preferred), macOS, or Windows Recording for Future Referenece All live sessions will be recorded and made available to participants, ensuring they have access to the content for future reference and continued learning.  Topics Installation of software Simulation of Protein (receptor) Structure and of Receptor-Ligand Complex and Analysis of Results Course Completion Certificate​ At the end of the workshop, participants will receive an e-certificate of completion, recognizing their effort and newfound skills in GROMACS and Molecular Dynamics. Course Plan Please download the course plan and  Brochure from the links provided below. Download Now  Brochure  Schedule One-Weeek Workshop on Molecular Dynamics Simulation Day & Time Session Topics Link Day 1, 07.30 pm Theoretical principles related to MD Simulation Introduction to the fundamental concepts of molecular dynamics Force fields, integration methods, and the importance of time steps in simulations Installation of GROMACS or NAMD Day 2, 07.30 pm System Setup for Simulation Detailed walkthrough of preparing a system for MD simulation Selection and preparation of biomolecules, solvation, ion addition, and energy minimization Troubleshooting installation issues Day 3, 07.30 pm Simulation of Protein (receptor) structure Simulating protein structures Equilibrate the system and run production MD simulations Day 4, 07.30 pm Simulation of Receptor-Ligand complex Explore the dynamics of receptor-ligand interactions Docking and binding site analysis Conformational changes upon ligand binding Day 5, 07.30 pm Analysis of Results Methods and tools for analyzing MD simulation results Trajectory analysis, calculation of RMSD, RMSF Hydrogen bonds, and secondary structure analysis Visualization tools like VMD to interpret and present the findings effectively Day 6, 07.30 pm Assignment/ Q&A Discussion Doubt-Clearing Session Resource Person Github Linkedin Facebook Google-plus Dr. Shaik Mohammad Abdul Fayaz Assistant Professor Department of Biotechnology Manipal Institute of Technology (MIT) Manipal Academy of Higher Education (MAHE) Manipal, Karnataka, India Github Linkedin Facebook Google-plus Github Linkedin Facebook Google-plus Registration Registration Fee Rs. 2500 Register Now Registration Fee For Indian Participants: Rs. 2500Foriegn Participants: USD. 40 SIAS Research Forum MembersStudent Member: Rs. 2250Faculty Member: Rs. 2000 Feedback from the participants We will update this part after the compltion of the workshop! 

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