Training Program on GROMACS Molecular Dynamics MD

Two-Week Online Workshop on

GROMACS

Introduction to Molecular Dynamics

Date

08 - 19 Sept 2025

Time

07.30 pm IST

About the Workshop

This two-week online hands-on training on GROMACS is designed to provide participants with comprehensive knowledge and practical experience in molecular dynamics (MD) simulations. The workshop covers a wide range of topics—from fundamental concepts of MD and high-performance computing (HPC) to advanced simulations involving protein-ligand, membrane-protein, metal complexes, and nanomaterial interactions. Participants will gain hands-on experience using GROMACS tools, simulation setup, data analysis, and visualization techniques.

 

The program also introduces web-based resources like CHARMM-GUI and covers workflows for real-world biomolecular systems. This workshop is ideal for students, researchers, and professionals from chemistry, biology, physics, and computational sciences seeking to enhance their skills in molecular simulation.

Target Audience

Students, Researchers and faculty members of Biology, Chemistry, Physics and material science 

Key Topics:

  • Introduction to MD Simulations

  • Installation & Workflow

  • Analysis and Visualization

  • Protein-Ligand Simulations

  • Protein-Metal Complex/Nanomaterial Simulations

Features

  • Step-by-step Simulation Workflows

  • Assignments and Practical Exercises

  • Recordings will be available.

  • eCertificate will be provided

Optional HPC Access

Participants can avail remote High-Performance Computing (HPC) access for 1 month to run their simulations efficiently with a nominal fee of Rs. 2500.

Recordings & Certificate

  • Recordings of live sessions will be available for future reference.
  • Participants will receive an e-certificate of completion. 

Course Plan

Please download the course plan and  Brochure from the links provided below.

Download Now 

Schedule

Two-Week Workshop on GROMACS

Day & Time

Session

Topics

Link

Resource Persons

Dr. SM Abdul Fayaz

Associate Professor
Department of Biotechnology Manipal Institute of Technology (MIT)
Manipal Academy of Higher Education (MAHE), Manipal

Dr. Bibhab Majumdar

Assistant Professor
Department of Chemistry
School of Advanced Sciences, VIT-AP University, Amaravati, Andhra Pradesh

Registration

Registration Fee

For Indian Participants: Rs. 3000
Foreign Participants: USD 50

SIAS Research Forum Members
Student Member: Rs. 2700
Faculty Member: Rs. 2400

HPC Charge: Rs. 2500 (optional)

Feedback from the participants

We will update this part after the compltion of the workshop!